YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC17C9.16c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.97
Transmembrane Helix	84	104	0.92
Non-Cytoplasmic	105	115	0.81
Transmembrane Helix	116	139	0.85
Cytoplasmic	140	152	0.84
Transmembrane Helix	153	174	0.90
Non-Cytoplasmic	175	181	0.65
Transmembrane Helix	182	203	0.84
Cytoplasmic	204	210	0.76
Transmembrane Helix	211	234	0.89
Non-Cytoplasmic	235	242	0.72
Transmembrane Helix	243	262	0.94
Cytoplasmic	263	312	0.86
Transmembrane Helix	313	338	0.78
Non-Cytoplasmic	339	356	0.85
Transmembrane Helix	357	378	0.94
Cytoplasmic	379	397	0.96
Transmembrane Helix	398	418	0.95
Non-Cytoplasmic	419	424	0.86
Transmembrane Helix	425	445	0.92
Cytoplasmic	446	457	0.73
Transmembrane Helix	458	480	0.84
Non-Cytoplasmic	481	496	0.84
Transmembrane Helix	497	517	0.94
Cytoplasmic	518	531	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWFLRETIFG ELVEYFSGGT RQVDVEKLGV CTDNSNVELS SCPDSSFDDE KTNQVNSEGL  60
   61 IIVTWDGEDD PENPKNWPLW AKLVVTFDVC FLTFAVYMGS AIFTPGIQEI RETMHVGTVP 120
  121 VILGLTLFVE GYAVGPLIFS PLSEVPQIGR QKIYVLSLIV FICLQIPTAL GSSLGVLLPM 180
  181 RFLAGVFGSP ALSTGGASLA DIWQPWLYPY FMCFWSLGAV GGPVLGPLLG AAMVVAKSWR 240
  241 WQFWLLMMIS ALVLVIITFF MPETSEWHLL YKRAKRLREL TGNPNYKTEA EIASSQLSKG 300
  301 QFAKQILVRP IILCVSEPIV LSLTIYIGLV YSILYLWFEA FPILFTTVYH FTTIENGLVY 360
  361 MGILVGSVLT VAFYFIYLRK VMIPKFVENK GKFPAEEILI ISFPAAFFIP ISLFWFGWTG 420
  421 RESVHWIVPI VGTLFYASGS FLLFQSMFQY LAAAYPKYVA SVFAGNALFR SSMAAASPLY 480
  481 ARAMFNNTGP SYAPVGWGST ILGVISCIMI PIPFLIYKWG LKLRSRSKYA T