YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC12B10.09
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFNYVFSNS FSFLYLMVNV QCRIKEIMYW NICLYWDVFS KLIIYNKVCQ FGRIHIFHGK  60
   61 NRHQLLRTCH FTPSKRHSAM SFFEALGAGI CAGLAVDLSL FPIDTLKTRL QAKGGFVKNG 120
  121 GFHGVYRGLG SILVGSAPGA SLFFTTYENM KSRLSQSGLG LSDPQIHMCS ASLGEIAACI 180
  181 VRVPTEVIKQ RAQASGGTLS SRNILQTILK SNNVWRDFYA GYGITIAREI PFTLIQFPIW 240
  241 EHLKLKWRIK HSRNKNLAHE AAISGSIAGG IAAALTTPFD VVKTRIMTSQ QRLSYVFTIK 300
  301 SIVAHEGFLA LYKGIVPRVL WLSGGGAIFL GCYDVILNFM KAEGL

Type	Start	End	Confidence
Cytoplasmic	1	79	0.90
Transmembrane Helix	80	101	0.86
Non-Cytoplasmic	102	123	0.87
Transmembrane Helix	124	147	0.87
Cytoplasmic	148	256	0.89
Transmembrane Helix	257	277	0.82
Non-Cytoplasmic	278	317	0.71
Transmembrane Helix	318	337	0.90
Cytoplasmic	338	345	0.66