YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gmh3
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLQWKLSR VIFVLLIIGI SSFLIYFQFG NSFSASPALE RLQDVFSKPS VQEYDYLVPL  60
   61 DEDMQGLSTT YHQATINEDD PQEPKSHEIV ILLASDGRSS GNMAPETFNQ CIENRINYAK 120
  121 HHNYGFEYVN VSQMNIPPVW AKMPAIIQTM NKHPHAKWIW WLDQDALILN TELSIQEHIL 180
  181 SPDVLVEKLM KNEPMISPFS ADLERLTPSS YTVDSARSLG LLISQDLNGL NAGSFFVRRS 240
  241 PMMALFLDLW GDKSFRENKV ADHEQALLGY FVRYHPEIAA IIGILPQTLI NSYPVGQPEM 300
  301 GWKEGHLVIH FAGCWVENRC QVLWDEYRER VH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.81
Transmembrane Helix	11	30	0.90
Non-Cytoplasmic	31	332	0.99