YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RER1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFIQRHIEN VKEKKNFAVR LYRHWVDRTI PYTTYRWLTV SGLIALFFIR ILLVRGWYIV  60
   61 CYTLAIYLLN LFLAFLTPKF DPSVEQAMKD EEIEEGVLPT SKDDEFRPFI RRLPEFKFWY 120
  121 SSMRATLFAL VASFFRIFDV PVFWPILVVY YLVLSFFCFR RQIQHMLKYR YVPFDIGKKK 180
  181 FGSH

Type	Start	End	Confidence
Cytoplasmic	1	32	0.93
Transmembrane Helix	33	53	0.90
Non-Cytoplasmic	54	57	0.75
Transmembrane Helix	58	78	0.90
Cytoplasmic	79	115	0.94
Transmembrane Helix	116	135	0.88
Non-Cytoplasmic	136	141	0.69
Transmembrane Helix	142	160	0.93
Cytoplasmic	161	184	0.94