YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC17G8.11c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKILFYFFF FLTLILSATV YLFGGPMMLF FINYKTDLLK VDDVYNHEIY SNQSAAIPKI  60
   61 IHQTWKTNEI PEKWVGAQKS CIDLHPDYEY VLWTDESMRE FIATDYPWFL TQYDSYPYNI 120
  121 ERADVVRYFI LYKYGGIYLD LDVGCNRTLD PLLHYPAWVR RTSPSGISNN VMGFAKGHPF 180
  181 LLQVVRNLPR FAFNYHFPYL TVMYSTGPLF LSIIWSAWRK LPDAEAWHHI WVMVPELYEK 240
  241 SHHAFFEIYE GSSWHDSDAG FVFYMLHHWA IFTFLGFLTF FIVVYFIFGY ALKPAARVSR 300
  301 TGRRVFSSPF SKTSPSRWKI FHRFTSSNEK YDQTRSDSLP FMSDYDLESQ TQSHSP

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.82
Transmembrane Helix	7	30	0.87
Cytoplasmic	31	195	0.92
Transmembrane Helix	196	218	0.90
Non-Cytoplasmic	219	268	0.93
Transmembrane Helix	269	290	0.94
Cytoplasmic	291	356	0.97