YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YD03_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSTTTAPP GTHPNATAST VFAILGTVCW CVQLIPQIIK NYRAKSTEGL DTLFILSWVV  60
   61 ASIPLSVYNQ VQELNIALKV QPELFQALAF TTFFQCLYYG SKWPLRKALF VVISFMLFSG 120
  121 GLQAMLILTI KLGIRRHVEW PVVFMGVLAT VLVNIGFLPQ YISIFRARAV TGISYLFLAI 180
  181 DSSGSLFSFL SLPFDRWDVL AAVDYGLLFI IEMGVFVLAF IFNVLLKNKS TPTDEDVTFT 240
  241 EEDGDEKDEE YSDIFSIKGK FNTRPNAWQN AYDSDTKSAI QIP

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.89
Transmembrane Helix	16	36	0.87
Cytoplasmic	37	48	0.84
Transmembrane Helix	49	68	0.84
Non-Cytoplasmic	69	83	0.70
Transmembrane Helix	84	101	0.81
Cytoplasmic	102	108	0.84
Transmembrane Helix	109	130	0.94
Non-Cytoplasmic	131	139	0.76
Transmembrane Helix	140	162	0.88
Cytoplasmic	163	171	0.74
Transmembrane Helix	172	192	0.92
Non-Cytoplasmic	193	200	0.83
Transmembrane Helix	201	225	0.85
Cytoplasmic	226	283	0.96