YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC777.04
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.99
Transmembrane Helix	51	73	0.92
Non-Cytoplasmic	74	79	0.87
Transmembrane Helix	80	99	0.92
Cytoplasmic	100	130	0.83
Transmembrane Helix	131	152	0.82
Non-Cytoplasmic	153	158	0.84
Transmembrane Helix	159	178	0.95
Cytoplasmic	179	189	0.78
Transmembrane Helix	190	212	0.89
Non-Cytoplasmic	213	239	0.91
Transmembrane Helix	240	264	0.86
Cytoplasmic	265	281	0.92
Transmembrane Helix	282	302	0.91
Non-Cytoplasmic	303	335	0.86
Transmembrane Helix	336	356	0.78
Cytoplasmic	357	379	0.84
Transmembrane Helix	380	398	0.95
Non-Cytoplasmic	399	406	0.79
Transmembrane Helix	407	432	0.82
Cytoplasmic	433	454	0.87
Transmembrane Helix	455	478	0.85
Non-Cytoplasmic	479	485	0.85
Transmembrane Helix	486	507	0.92
Cytoplasmic	508	521	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIKSKTII EPSENDIEKG EVDFVSSSIS NFEEAYEEGP SLKREFKSRH VNMISVAGAI  60
   61 GTGLVIGSGS ALLKGGPGSL FIAYLMTGIN LYVVLISLGE MAAFSSDDKG FSGFSSRYVD 120
  121 KALGFATGWN YFFKYAIVYP TNLTAVGIVI HYWRPDLNVG IWVAVFLVVI LAINLLHVKY 180
  181 FGEVEFWLSA VKILVLVTLI ITCIVITSGG TPVHHKIGFH YWRDPGAFAP YLVEGSTGRF 240
  241 LGFWACLVQS CFAYVGSEVV GIAFGEAPNP EKTIRKSSFQ SLFRIATFYV IGVFVLGLCV 300
  301 PYDSDILSSN ASKGNAAASP FVVAIKLAQI KVMPDVINAC LLVFIISSAN SDIYIGSRTL 360
  361 YALAKEGYAP KILMLQTKQG IPWVGCLVTS SFGLLAFMNT KSSSATIFGY FSSAVTVFGT 420
  421 INWINILLSY ICYHRATIVQ QIPTERIPFR SWGQPYIAYA SLIFTGLITF FNGYNAFIHG 480
  481 FKYRSFITSY IGIAAYVIMI LGWKFTFKAK RVTSSTVDFR K