YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC584.13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.97
Transmembrane Helix	43	62	0.94
Non-Cytoplasmic	63	74	0.66
Transmembrane Helix	75	95	0.87
Cytoplasmic	96	104	0.79
Transmembrane Helix	105	126	0.83
Non-Cytoplasmic	127	135	0.74
Transmembrane Helix	136	156	0.63
Cytoplasmic	157	165	0.53
Transmembrane Helix	166	187	0.86
Non-Cytoplasmic	188	195	0.50
Transmembrane Helix	196	218	0.89
Cytoplasmic	219	237	0.60
Transmembrane Helix	238	259	0.74
Non-Cytoplasmic	260	279	0.44
Transmembrane Helix	280	304	0.82
Cytoplasmic	305	383	0.63
Transmembrane Helix	384	403	0.95
Non-Cytoplasmic	404	409	0.72
Transmembrane Helix	410	433	0.90
Cytoplasmic	434	450	0.96
Transmembrane Helix	451	473	0.89
Non-Cytoplasmic	474	480	0.94
Transmembrane Helix	481	502	0.95
Cytoplasmic	503	544	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFKKSSNT APSQHEDVEA LASDEADLAA LGYKQEFKRE FSAWTSFCVS FSVLGLLPSF  60
   61 ASTMYYTTGY AGTPAMVWGW LIAMVFVQCV ANGMAELCSS MPTSGGLYYA AAVLAPKGWG 120
  121 PFAAWLTGWS NYLVQVTGPP SVAYSFAGMI LTLVQLHNPN FETQNYQIFL LAVAAMIAQG 180
  181 FISSMPTKVL AVFNTWGTVL NMLFLAIVMI TVLAVAGTKT PRGFNSNHKV WNEFDNQTDW 240
  241 SNGMAMLMSF AGVIWTMSGY DSPFHLSEEC SNASVAAPRA IVMTSAFGGI VGWLLNLCIA 300
  301 YTIVDVNAAM NDDLGQPFVV YLRQVCNYKT TVALTSLTVI CSFMMGQGCM VAASRVTYSY 360
  361 ARDGVFPFSK YLAIVDKRTK TPNVCVWMNV VVGILCCLLI FAGEAAINAI FSVGAIAAFV 420
  421 AFTTPIFLRV FFVKEDEFKR GPWHLGKFSK INGYAACAFV LLMVPILCFP QFRGKDNTPD 480
  481 AMNWTCVVFG GPMLMVLIWW FVSARKWFKG PRLTIGVDDA VSEINVLEGV TKSDDDSIST 540
  541 LKKK