YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	erg28
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQILAMLPD SLVAKWNVVV SVAALFNTVQ SFLTPKLTKR VYSNTNEVNG LQGRTFGIWT  60
   61 LLSAIVRFYC AYHITNPDVY FLCQCTYYLA CFHFLSEWLL FRTTNLGPGL LSPIVVSTVS 120
  121 IWFMAKEKAS ILGIAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.42
Transmembrane Helix	12	34	0.75
Cytoplasmic	35	50	0.48
Transmembrane Helix	51	71	0.75
Non-Cytoplasmic	72	105	0.50
Transmembrane Helix	106	125	0.88
Cytoplasmic	126	136	0.86