YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC12C2.09c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESEQLLEK QQDHKWDAAT HADKGITIKT GKIAVSSSDI PLRNRKGLLT WDQLEPWQQD  60
   61 NQYIISGYRP PSFSFYLCVK SIFHVHNESV NIWTHLFGAI VFLFFIFKSE LILKRDTTTA 120
  121 EDVYVITVFL FSAFTMLGCS TFYHTISNHS DDVSKFGNKL DYLGIVVMIV GSFIPCLHYA 180
  181 FACHANFRTL YIGTIIGIGV IVASTCLLDR FRQPEWRPYR ALIFVLMGLF GIFPVIHALK 240
  241 IFSFSEILVR MGLVWLLLQG LFYIVGAVIY ALRIPEKWSP GKYDVFGSSH QWFHVCVIIA 300
  301 AFCHFHGVCI AYDYFHERRG CGEM

Type	Start	End	Confidence
Cytoplasmic	1	89	0.62
Transmembrane Helix	90	112	0.83
Non-Cytoplasmic	113	122	0.51
Transmembrane Helix	123	146	0.90
Cytoplasmic	147	159	0.52
Transmembrane Helix	160	182	0.90
Non-Cytoplasmic	183	188	0.48
Transmembrane Helix	189	208	0.95
Cytoplasmic	209	218	0.46
Transmembrane Helix	219	241	0.89
Non-Cytoplasmic	242	250	0.46
Transmembrane Helix	251	272	0.92
Cytoplasmic	273	290	0.50
Transmembrane Helix	291	315	0.82
Non-Cytoplasmic	316	324	0.50