YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC2F12.15c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLIHKVSTI CQCVLVILAK YCMQIIALSL MSGVQWLAWG IYKINKNRVG IIILFLYIMI  60
   61 VTCYVLTNLT PPGSPSETSF DPNSTRQYMT LQNGKSRFCE KCQEYKCDRS HHCSQCNKCI 120
  121 LRMDHHCMWF KNCVGFRNHK FFFLECFYLN LYSICVLYST FVAITKTFTA EGANISAIYL 180
  181 VFWGFLFAFA VGMSIVMTAF TFYHTSLLIH NLSTLESMSS SWSRYTHSTQ PFNVGWYENW 240
  241 CQIMGKSPFL WLLPFPNSIG EGVEYPLNAN ALPYLPQTEE KNDKLYKSSV PASIAGAEGW 300
  301 SSDEEQYAMK NRRWNPHMGQ YEWIEDFLV

Type	Start	End	Confidence
Cytoplasmic	1	16	0.61
Transmembrane Helix	17	39	0.78
Non-Cytoplasmic	40	48	0.59
Transmembrane Helix	49	70	0.90
Cytoplasmic	71	145	0.68
Transmembrane Helix	146	168	0.83
Non-Cytoplasmic	169	178	0.58
Transmembrane Helix	179	203	0.88
Cytoplasmic	204	329	0.67