YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	abc2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.89
Transmembrane Helix	23	47	0.82
Cytoplasmic	48	60	0.92
Transmembrane Helix	61	80	0.94
Non-Cytoplasmic	81	87	0.86
Transmembrane Helix	88	107	0.93
Cytoplasmic	108	116	0.81
Transmembrane Helix	117	136	0.92
Non-Cytoplasmic	137	145	0.67
Transmembrane Helix	146	167	0.88
Cytoplasmic	168	253	0.94
Transmembrane Helix	254	276	0.84
Non-Cytoplasmic	277	310	0.89
Transmembrane Helix	311	332	0.86
Cytoplasmic	333	383	0.94
Transmembrane Helix	384	403	0.92
Non-Cytoplasmic	404	412	0.64
Transmembrane Helix	413	434	0.92
Cytoplasmic	435	494	0.95
Transmembrane Helix	495	517	0.87
Non-Cytoplasmic	518	529	0.75
Transmembrane Helix	530	556	0.64
Cytoplasmic	557	906	0.99
Transmembrane Helix	907	929	0.89
Non-Cytoplasmic	930	960	0.89
Transmembrane Helix	961	986	0.87
Cytoplasmic	987	1041	0.94
Transmembrane Helix	1042	1067	0.87
Non-Cytoplasmic	1068	1143	0.91
Transmembrane Helix	1144	1164	0.78
Cytoplasmic	1165	1173	0.57
Transmembrane Helix	1174	1192	0.40
Non-Cytoplasmic	1193	1478	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLEQDLDPF VGGNWMNSAY KGFTFLSATW LAPNIYLLIS GCLQYFYEVR KRSHYFHFRR  60
   61 FWTIWLKSLV IMVLLFTHIY DCYKTNESVW NVLSIITYFL ALFLHVVEQP TLRIPMASLL 120
  121 MFWLFKFLAS ALVLLLRPNY TMFPMLNVVP SITFFCSLVC LLAEIYVPPA NRVWYPDDAA 180
  181 ELEETGLRPS RFTYANIFSR ISFGWLSPLM KFGYRNYLTE SDAWSLPPAE RSSNLTIVFE 240
  241 KNWISHAKKK KSSLYMWGVL FLNHWKLTVV IIVLKLVQDV VAFIQPNLIR KIVIFVSSYS 300
  301 SEHPQPPQVG FSLAIAMFLT NVVQTALLQQ YFQLGMVLGM RWRSELITAI YRKSLRLSSA 360
  361 ARQSRSVGDI VNYMSVDTQK VCDLTMFLFV IVSGPFQIVL ALTNLYHLVG YGALSGAFVT 420
  421 FLLFPCNVVI ASIFKRFQNR QMKNKDARSQ FMTEIINNIR SIKLYAWENI FLQKLLQLRN 480
  481 TRELRMLKKI GIVNTIGNFT WLFAPILVSA ATFGTFIVLY GKTRVLSVDI VFACLSLFNL 540
  541 LQFPLTMLPI VVSSVLEASV AISRIYGFLT AGELDSNAVQ RYPANKEPSG VCLEIKKGTF 600
  601 SWSGPGQNAA EPTLRDIDFV ARRGELCCIV GKVGMGKSSL LEACLGNMQK HSGSVFRCGS 660
  661 IAYAAQQPWI LNATIQENIL FGLELDPEFY EKTIRACCLL RDFEILADGD QTEVGEKGIS 720
  721 LSGGQKARIS LARAVYSRSD IYLLDDILSA VDQHVNRDLV RNLLGSKGLL RSRCVILSTN 780
  781 SLTVLKEASM IYMLRNGKII ESGSFTQLSS SPDSQLFQLL SEFSKKDTAS STGADTPLSR 840
  841 SQSVITSSTD VTSSASRSSD TVSNYPKATI KGTGRIRKRL TDEDNVKATG QAAEKMERGK 900
  901 VKWKVYWTYF KACSLFLIFL YFLFIIGGIG MNVGTNVWLK HWSEVNTQLG YNPKPYFYLG 960
  961 IYTLFGLLSC ALISLSSLTI TVFCAIKSCR YLHDSMVKAV LRAPMSFFET TPTGRILNRF1020
 1021 SSDVYRVDEV ISRVFMFFFR NLFQIVFVLA VICYSSPMFM ILIVPLFFLY RYNQVYYTQT1080
 1081 SRELKRLDSV TRSPLYAHFQ ESLGGLSTIR AYDMEDTFIS ENDIRVDTNH RIWFLYFSSN1140
 1141 RWQAIRVEAI GALVVFSSAF FGVLSAVRGN PNSGLVGLSL SYAVQITQSL TFVVRQSVDV1200
 1201 ETNIVSVERM LEYIGLPSEA PSIIPDHRPP EGWPSHGAIK FDHYSVRYRE NLPLVLNDIS1260
 1261 VNIKPQEKIG IVGRTGAGKS TLTLALFRLI EPTSGDIQLD DINITSIGLH DLRSRLAIIP1320
 1321 QENQAFEGTI RENLDPNANA TDEEIWHALE AASLKQFIQT LDGGLYSRVT EGGANLSSGQ1380
 1381 RQLMCLTRAL LTPTRVLLLD EATAAVDVET DAIVQRTIRE RFNDRTILTI AHRINTVMDS1440
 1441 NRILVLDHGK VVEFDSTKKL LENKASLFYS LAKESGLI