YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC11D3.18c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.99
Transmembrane Helix	54	73	0.91
Non-Cytoplasmic	74	97	0.83
Transmembrane Helix	98	119	0.81
Cytoplasmic	120	127	0.83
Transmembrane Helix	128	147	0.92
Non-Cytoplasmic	148	152	0.67
Transmembrane Helix	153	175	0.88
Cytoplasmic	176	186	0.87
Transmembrane Helix	187	208	0.94
Non-Cytoplasmic	209	220	0.88
Transmembrane Helix	221	241	0.95
Cytoplasmic	242	296	0.94
Transmembrane Helix	297	319	0.77
Non-Cytoplasmic	320	325	0.76
Transmembrane Helix	326	345	0.93
Cytoplasmic	346	352	0.84
Transmembrane Helix	353	372	0.95
Non-Cytoplasmic	373	379	0.84
Transmembrane Helix	380	401	0.91
Cytoplasmic	402	413	0.81
Transmembrane Helix	414	433	0.66
Non-Cytoplasmic	434	441	0.66
Transmembrane Helix	442	466	0.86
Cytoplasmic	467	498	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQSEYKIS KDDEHSIYAS EINKEKLQNT ASPDVDYGDT ASLKIDPKVE KKLLLKMDLV  60
   61 ISPIIGFLYL MAFLDRSNIG NAAVAGMTEA LSLYGERLNV AVSIFYVLYI LVETPSVVLV 120
  121 KRIKASRMLA FISFAWSMTV LFSGFMSSYG GLIATRLILG LLEGCLFPAL NLYLTTHYTR 180
  181 KEQCQRLSYL FASAGLAGAF GGLFAYALEQ VHAGNKEGWQ WIYIVEGLVS FIGVPLCLFA 240
  241 LPDKMENAWF LTREEREVAI IRRDINARYH GEQHFEWSEV RKAFKDPKVY VSATSQFCAD 300
  301 MVLYGFSSFL PVIIKGLGFV GLQTNYMTIP VYIAGVISFL FVAWLSDRTQ LRAVYLISAS 360
  361 TVVAVGYIIM LASDSNAAKY TATYIIAIGC YIGPGLNLGW LNNNVAGHYK RATAIGIQQT 420
  421 LANSSGIVAG QIYRSKNAPK YILGNAFTLG CVIVGGLAYV VMFFSLRYVN KKRDERCARG 480
  481 EFDPSAIGDF ADDFRYYL