YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC11D3.08c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.82
Transmembrane Helix	53	73	0.85
Non-Cytoplasmic	74	81	0.61
Transmembrane Helix	82	106	0.83
Cytoplasmic	107	126	0.55
Transmembrane Helix	127	149	0.81
Non-Cytoplasmic	150	174	0.84
Transmembrane Helix	175	196	0.88
Cytoplasmic	197	203	0.73
Transmembrane Helix	204	222	0.95
Non-Cytoplasmic	223	245	0.85
Transmembrane Helix	246	264	0.92
Cytoplasmic	265	282	0.84
Transmembrane Helix	283	306	0.90
Non-Cytoplasmic	307	335	0.93
Transmembrane Helix	336	357	0.93
Cytoplasmic	358	384	0.93
Transmembrane Helix	385	406	0.91
Non-Cytoplasmic	407	413	0.67
Transmembrane Helix	414	436	0.87
Cytoplasmic	437	452	0.90
Transmembrane Helix	453	473	0.91
Non-Cytoplasmic	474	480	0.90
Transmembrane Helix	481	501	0.94
Cytoplasmic	502	550	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIDKESLK QNQKQWENEV ELGESREANQ DDELLMSLGY KPEFTREFSY VSIFGQSFGS  60
   61 MGLCPAMAGS LIFSMNCGGG GMVWSWIIGC ICLIPVSISL GELASSMPTS GGLYFWIFTL 120
  121 ASPSSRAFLC WVCGYVSVLG YATIYASTVY SASSMVQALA VIGSPSYSPT KYEQYGIYAA 180
  181 LLFVISAMTA IPSRVIAKVN IINITFQFLV SIILIIALAA GSDSTTRNSG SFIFGDFTNY 240
  241 SGWSNMGWAF ILSFTTPVWV VSGFESSAAV AEESTNAAKA APFAMISSLG VATILGWCIV 300
  301 ITVVATMGHD FNAILGSSLG QPVAQVLVNN VGNKGALGIF SLLVIALCLN CISLLIAASR 360
  361 EVFAFCRDGG IPGSRYLRLL TKQKVPLNAI LLVLLYSLLV GLLILVNVTA ISSVFNLAII 420
  421 ALYIAYSGPL MCRFVYNKFQ PGVFYVGKWS KPAALWSLVW MWFMILMLLF PQYQKPNQDE 480
  481 MNWAIVVLGF VMVFCVVYYY LPKIGGKTFF TGPIPTVQQE NEYISGVPLN ELSLSSLPLP 540
  541 KDFDQKQITE