YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC11D3.06
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.82
Transmembrane Helix	10	28	0.61
Non-Cytoplasmic	29	46	0.59
Transmembrane Helix	47	69	0.87
Cytoplasmic	70	86	0.58
Transmembrane Helix	87	109	0.94
Non-Cytoplasmic	110	129	0.68
Transmembrane Helix	130	147	0.66
Cytoplasmic	148	159	0.75
Transmembrane Helix	160	182	0.87
Non-Cytoplasmic	183	188	0.74
Transmembrane Helix	189	210	0.85
Cytoplasmic	211	228	0.88
Transmembrane Helix	229	249	0.81
Non-Cytoplasmic	250	275	0.68
Transmembrane Helix	276	295	0.75
Cytoplasmic	296	305	0.70
Transmembrane Helix	306	329	0.88
Non-Cytoplasmic	330	342	0.72
Transmembrane Helix	343	363	0.76
Cytoplasmic	364	379	0.80
Transmembrane Helix	380	401	0.92
Non-Cytoplasmic	402	408	0.77
Transmembrane Helix	409	429	0.93
Cytoplasmic	430	455	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRPLTEVKY LLINSAPVIL GYALQNSLQT SSVIVTGRLG PSELSVAAFA YMFAMSTGWL  60
   61 IALGGTTAFD TLGSNLWGAG KKQELGILLQ TGFIVLSILY LPICLVWWYS KPILIFLHQT 120
  121 PELAEASQKF LRYLIPGGLG YVCFELLKKF LQTQEITRAG SYILLVTSPL NVALNFLLVH 180
  181 YYGLGLKGAP LATGLSYWLS FILLTQYAKY VKGAEAWNGW NKRCLENFGP FVKLSLLGIV 240
  241 MVGTEWWAFE IVALVAGKLG AVPLAAQSVI MTTDQLLNTI PFGLGIITSN RVAYYLGAGL 300
  301 PDNASLTAKV AAIVGVAVGS VIMITMIAVR NIYGRIFTND PDVIQLVALV MPLVAAFQIS 360
  361 DSLNGTMGGA LRGTGRQKVG AIVNITAYYL FALPLGIYLA FHGKGLVGLW IGQVIALSIV 420
  421 GILELKIVMA TDWISQSRKA ISRFGDSSEL TALLN