YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AVT3_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	279	0.73
Transmembrane Helix	280	296	0.69
Non-Cytoplasmic	297	304	0.67
Transmembrane Helix	305	327	0.91
Cytoplasmic	328	350	0.85
Transmembrane Helix	351	372	0.87
Non-Cytoplasmic	373	389	0.87
Transmembrane Helix	390	409	0.93
Cytoplasmic	410	416	0.84
Transmembrane Helix	417	436	0.93
Non-Cytoplasmic	437	456	0.88
Transmembrane Helix	457	477	0.94
Cytoplasmic	478	489	0.91
Transmembrane Helix	490	513	0.91
Non-Cytoplasmic	514	533	0.92
Transmembrane Helix	534	557	0.92
Cytoplasmic	558	576	0.95
Transmembrane Helix	577	594	0.96
Non-Cytoplasmic	595	599	0.80
Transmembrane Helix	600	621	0.88
Cytoplasmic	622	629	0.90
Transmembrane Helix	630	653	0.86
Non-Cytoplasmic	654	656	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSQSIKIK KPRSNENFAS GSYSSRRSQQ IHRLSHSPMA EGFHKPKLNI SPSESNLPNN  60
   61 VAENTTDTPV NYGSIRDENH NSRKGKDVTL NSDEAHSENV PSTSEDPDVV RRHLGGQAAD 120
  121 DDNFSSLQLQ GGDMHRQVYR WQQEVDQNKQ IRRGRSRSFS AKVSDPNLHL RSVQDMKQAG 180
  181 GMRRDFLRNR ASSISMSSNA HGNPNFLNRN FIEFLSVYGH FAGEELSEED EDEDTDDFAM 240
  241 PRDVNPSLIH STVPSEQEPL ISRHGRYKLQ TPGNASNGKA VLLLLKSFVG TGVLFLPKAF 300
  301 KLGGLVFSSA TLLIVGVLSH ICFLLLIQTR MKVPGSFGDI GGTLYGPHMR FAILASIVVS 360
  361 QIGFSSAYIS FVASTLQACV KVISTTHREY HLAVFIFIQF LVFVPLSLVR KISKLSATAL 420
  421 IADVFILLGI LYLYFWDVIT LATKGIADVA MFNKTDFSLF IGVAIFTYEG ICLILPIQEQ 480
  481 MAKPKNLPKL LTGVMAAISL LFISIGLLSY AAFGSKVKTV VILNMPESTF TVIIQFLYAI 540
  541 AILLSTPLQL FPAIAIIEQG IFTRSGKRNR KIKWRKNYLR VLIVILAILI SWAGSSRLDL 600
  601 FVSMVGSVCC IPLIYMYPPM LHYKACANNW ILRTLDIFMF TIGAFAMAFT TYMTFF