YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC3H1.06c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.99
Transmembrane Helix	90	110	0.85
Non-Cytoplasmic	111	126	0.73
Transmembrane Helix	127	148	0.88
Cytoplasmic	149	155	0.87
Transmembrane Helix	156	178	0.90
Non-Cytoplasmic	179	185	0.70
Transmembrane Helix	186	206	0.91
Cytoplasmic	207	214	0.79
Transmembrane Helix	215	237	0.90
Non-Cytoplasmic	238	245	0.81
Transmembrane Helix	246	268	0.92
Cytoplasmic	269	281	0.89
Transmembrane Helix	282	303	0.90
Non-Cytoplasmic	304	310	0.76
Transmembrane Helix	311	332	0.90
Cytoplasmic	333	348	0.77
Transmembrane Helix	349	366	0.92
Non-Cytoplasmic	367	388	0.79
Transmembrane Helix	389	410	0.91
Cytoplasmic	411	419	0.82
Transmembrane Helix	420	439	0.95
Non-Cytoplasmic	440	448	0.77
Transmembrane Helix	449	468	0.56
Cytoplasmic	469	469	0.41
Transmembrane Helix	470	503	0.59
Non-Cytoplasmic	504	544	0.56
Transmembrane Helix	545	565	0.87
Cytoplasmic	566	589	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSSSPNRS LNPTRGLNLY STGNEVTWFS STVDEVNELK PAKSKAFSIS AQDQIYGTSS  60
   61 LKSRFSTHEA SSEKDDSSDF TLVLPSNRMY IVIPGLMLSI FLSALDQTVI TTAIPTIVAN 120
  121 LDGGSSYSWI GTAYTLAQTS ILPFCGIMSE VVGRKIVLYT SIVLFLFGSA MCGAAQNMLW 180
  181 LVLCRAVQGI GGGGITSLVT IVIADITPLQ TRPYYTGCMG VTWGLASVMG PLIGGAISQK 240
  241 ASWRWIFFIN LPTGGLSLAL LIFFLNLVPK PTVSFRVFLR DFDFVGIITI TTGVVLFLVG 300
  301 LNIGSTTGHW AHANVLCYLI FGILCIAGFV VNEFYTTRTR IITPSAFKTL SLTSVMVTSF 360
  361 LHYYIVSTIT YYIPVYFQNI KGDGPLMSGV HTLSLAVVSS LLSAVSGMGI GKLKNYRYPM 420
  421 IGGWIVLLAG TGSMIAIYYN TDISRTMGFL ALTAVGTGNL FQPNLIAVQA SVPPALIATS 480
  481 CSAFMLLRNM GASVGISMGA VIYDQQLTTL LKGTKYSAGL SYSQIASIPN VSEKNFVFNA 540
  541 YANAIRMIWI VNCPVAGVGM LLSFFTKQEK LSQSVTEYKE KDKGFKDAP