YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FIP1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDVFSVAI FFIVLRETLE ASIIVSVLMS FISQTLMDKD GNVTDPKLKR KFMLQVWIGS  60
   61 FTALFICLAI GGGFIGAFYA LDKDIWSGSE EIWEGVFSLI AVVLITVMGF AMLRVSHLQE 120
  121 KWRKKLMKSI ANRKAKGISN WGKKYSMFLL PFFTVLREGL EVVVFVGGVG LETPATAFPL 180
  181 PVICGLIVGC LIGYFIYRGG NVMNLQWFLI ASTCILYLIS AGLMSKATFY FEMNKWNHQT 240
  241 GGDAGELGDG PGSYPFKSAV WHVNYGNPEM NSNGGYMIFN AILGWNNTGT YGSILSYIIY 300
  301 WLFVAFIMFL MWYKERRAAR LLIAKLGDKV VDLEAASSHT PVQSSSSEDE FKINSPTDDK 360
  361 GDKAIDIVTE VRESSSPVEE HKDDKTVDVI NEIRESH

Type	Start	End	Confidence
Cytoplasmic	1	55	0.66
Transmembrane Helix	56	78	0.94
Non-Cytoplasmic	79	95	0.87
Transmembrane Helix	96	118	0.92
Cytoplasmic	119	144	0.94
Transmembrane Helix	145	169	0.78
Non-Cytoplasmic	170	176	0.78
Transmembrane Helix	177	197	0.96
Cytoplasmic	198	206	0.81
Transmembrane Helix	207	227	0.92
Non-Cytoplasmic	228	292	0.95
Transmembrane Helix	293	313	0.94
Cytoplasmic	314	397	0.99