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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPAC30D11.01c
Protein type: Globular with Signal Peptide
Type Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFKFNFTT AFLFTILAFA QARSHSSSSS STSKSSASHH SSINSTSATS VYDFSSLTTP  60
   61 IVPTNGVAQE PTLYESSRGL SCPGYQARNI SEYSYGVLAI LELAGDACYA YGTDYPYLLL 120
  121 NVSYDTEERV HISISDLNQT QFQLSNRRDV WDAPLFYRSS NFSGNLQYNF SFNTDPFEFW 180
  181 ITRIADDQVL FDTRGNPLIF EDQYIELTTN MVEDYNVYGL SGSQQSFRLG NNLTKTFWAT 240
  241 GYSDSPEANM YGSHPFYMEQ RYIPIGTTNT YTSASHGVLM LSSNGMEVLL RSTYIKYRMI 300
  301 GGIIDLFVYS GSTVSPKYTI QQYVQSIGTP TMQPYWSLGF QMSRWGYKTL SDLINMRSYL 360
  361 NASNIPTEGF WNDIDYMSEF RTFTVNSTAF PPNQTLDFFR SLDESHQHYV PVLDPAIYAA 420
  421 NPNKSADRTY YPYYSGFEDN IFIKNPNGSA YVGMAWPGFV VYPDFTNPAV LQYWKQGILN 480
  481 LSTAFGSNYS YDLPFSGLCL DMNEPTSFCI GSCGSDLLKL NPVHPPFSLP GDVDNKVYSY 540
  541 PEDFNATNTT EYKSVSRASQ SQYKATATSE KSHETPSSES LINGKPEFSI NYPPYALDTD 600
  601 TETHDLAQFG VSPNATMHGN TLRYNLFNTY GYSESKISFE ALNSIQPNIR PFLLSRSTFV 660
  661 GSGRYAAHWL GDNKSQWSDM VSSISSILTF NLLGIPMVGA DVCGYNGNTD EELCARWMAL 720
  721 GAFLPFYRNH NSLGSIPQEP FRWASVAEAS RSAIEIRYSL LPYWYTLMHT ASVDGTPMVR 780
  781 PLFFEFPKQI SLASVDKQFM IGTALLISPA LEPNTTYIQG IIPGDNDTIW YDWYNHSVIN 840
  841 HDYDENITMS APLGYVNIAV RGGNIIPLQQ PGYTTYESRN NPYSLLIAMD NNGFASGSLY 900
  901 IDDGISMQTN SSLSVKLNSN SNTITCVVSG TMVSSPSLAN ITILGLSNPP NTILFNGQQL 960
  961 SDYQYSDQTL SLTNLLDLTV DGAFSKNWTV TWS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle