YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC24B11.08c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFRSPLRRF DAFQKTVEDA RIKTASGGLI TLVSGLIVIF IVLMEWINYR RVIAVHEIIV  60
   61 NPSHGDRMEI NFNITFPRIP CQILTVDVLD VSGEFQRDIH HTVSKTRLSP SGEIISVDDL 120
  121 DIGNQQSISD DGAAECGDCY GAADFAPEDT PGCCNTCDAV RDAYGKAHWR IGDVDAFKQC 180
  181 KDENFKELYE AQKVEGCNLA GQLSVNRMAG NFHIAPGRST QNGNQHVHDT RDYINELDLH 240
  241 DMSHSIHHLS FGPPLDASVH YSNPLDGTVK KVSTADYRYE YFIKCVSYQF MPLSKSTLPI 300
  301 DTNKYAVTQH ERSIRGGREE KVPTHVNFHG GIPGVWFQFD ISPMRVIERQ VRGNTFGGFL 360
  361 SNVLALLGGC VTLASFVDRG YYEVQKLKKN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.82
Transmembrane Helix	21	44	0.87
Non-Cytoplasmic	45	355	0.84
Transmembrane Helix	356	377	0.67
Cytoplasmic	378	390	0.53