YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sif3
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKDKLNLP PKRTINTRLS TPVHIPPPIN SESTRITPQH GSPPRFGDHR ISAAQGLFQR  60
   61 RRNARKIDHP LGWFLKNRHA AAHIPQRTTK TSQKLVLLPE NHAVNSFNEE ESNYEDLLTP 120
  121 SDAYNLIKLE NLPRDKREEL GFPRATAYCV CEAFQLPKVK HFLKHYHKVR AKKYDEVLYA 180
  181 VYHLPLVYGR SESCRVSSGP APDDMPSSAS NHNQKHLDSD KPDNENFDSH IISQLYRISE 240
  241 IFVFSYGVVV FWNFSLSQEK DILADLTFGG DNSLMVKPLA EEECEIEDLH FHYAPNTKRP 300
  301 RIYNDMIHIP SADNKMKLAM SHALAQSVKL SRFELRTDVT MNSALFYPKK LALYGHLGLS 360
  361 RVEVVRMSGH LFQLRVDVNL ISNILDTPDF LWDSEPLLLP LYTAFREYLE IGPRTNVLNR 420
  421 RCKVIFDMLD IFGKSSADRK MNSITWIIII LISLFVIIFT SYCDSDGLIG NCVLLVYVDG 480
  481 LWSVKTNGFR QLSLFILSFS PQNISPFINL

Type	Start	End	Confidence
Non-Cytoplasmic	1	237	0.53
Transmembrane Helix	238	254	0.31
Cytoplasmic	255	442	0.77
Transmembrane Helix	443	462	0.89
Non-Cytoplasmic	463	466	0.70
Transmembrane Helix	467	486	0.42
Cytoplasmic	487	510	0.50