YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC4G8.12c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.97
Transmembrane Helix	7	27	0.85
Non-Cytoplasmic	28	60	0.93
Transmembrane Helix	61	82	0.82
Cytoplasmic	83	91	0.83
Transmembrane Helix	92	114	0.87
Non-Cytoplasmic	115	134	0.71
Transmembrane Helix	135	157	0.79
Cytoplasmic	158	169	0.59
Transmembrane Helix	170	196	0.83
Non-Cytoplasmic	197	215	0.52
Transmembrane Helix	216	236	0.91
Cytoplasmic	237	270	0.47
Transmembrane Helix	271	292	0.71
Non-Cytoplasmic	293	297	0.31
Transmembrane Helix	298	332	0.61
Cytoplasmic	333	336	0.28
Transmembrane Helix	337	363	0.76
Non-Cytoplasmic	364	533	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKNRKYAII YTFLLILRFW FSQGSSYIHP DEHLQSFQIF ANKLFGWKVE LPWEFTTKKP  60
   61 IRSVVPLNVM LLPIFLLCRC ICKSNCSPYP ILLFTRLYMC LISLLIDLSI WNIVPLNARW 120
  121 SALLLYSSSF MATTFQTHTF TNSIETIFFF LTILFLSKLN SVPLNKKISY LYTFLLAIVS 180
  181 VLGFFTRITF LAFVIAPYIY FSVRCFKKNV NNPKDIFLHL CIFVSVSFAT VLACILEDYK 240
  241 FYGVFVITFW NNLKYNSQIE NLSQHGLHSR LTHFFTNMPL LCGPLIFVPK LWDVRKPATW 300
  301 LWLLPVFILS LFPHQEPRFL LPAASIFIVN SGCLVRSYWI KFLFVMYAVV LAVFFGIMHQ 360
  361 NGVIPAVLEV KNIIEQRNVT TMENCNLYFN PEMPTTIYFW KIYSAPTWML ARPKFSQINT 420
  421 SHLYNYSTKQ MISKFWETYY EEVKVVNLPE ENTTEFQAST LLVCPVAMLQ TSSYLQNLTM 480
  481 LHYIPYHVDL DDTDELPLAE LIMNHGIGIF TAKEICENNT ITNELPTVLR SVG