YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC16C9.02c
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKQAEPILL GVIGGSGFYD LPGFDIVESV NPITPWGYPA SPISIARTTS GFLIAFLARH  60
   61 GVGHIYTPTE VPSRANIAAL KSLGVLAIVS FSAVGSLRED IPPEDFVLPT QIIDRTLCAR 120
  121 PNTFFESGCV AHVSFGDPFD QDLYEILSSC GSNLKNGSKL HTKRKGDDLT VVCMEGPAFS 180
  181 TRAESNLYRS WGASIINMSV IPEAKLAREA EIAYQMVCMA TDYDCWRMNE EPVTVETVME 240
  241 HISNNKDNAK IFLLEAVKKL EAPLLQGFLG RNLRESVQNG IQTNHKHRNP DAIRRLQFLF 300
  301 PNLTIPH

Type	Start	End	Confidence
Cytoplasmic	1	7	0.54
Transmembrane Helix	8	24	0.48
Non-Cytoplasmic	25	42	0.75
Transmembrane Helix	43	63	0.59
Cytoplasmic	64	76	0.61
Transmembrane Helix	77	95	0.65
Non-Cytoplasmic	96	307	0.91