YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gpi7
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.67
Transmembrane Helix	6	26	0.84
Non-Cytoplasmic	27	403	0.82
Transmembrane Helix	404	422	0.96
Cytoplasmic	423	430	0.69
Transmembrane Helix	431	451	0.82
Non-Cytoplasmic	452	455	0.75
Transmembrane Helix	456	473	0.72
Cytoplasmic	474	533	0.77
Transmembrane Helix	534	552	0.71
Non-Cytoplasmic	553	563	0.70
Transmembrane Helix	564	584	0.85
Cytoplasmic	585	595	0.70
Transmembrane Helix	596	615	0.78
Non-Cytoplasmic	616	666	0.85
Transmembrane Helix	667	687	0.97
Cytoplasmic	688	699	0.92
Transmembrane Helix	700	723	0.90
Non-Cytoplasmic	724	734	0.84
Transmembrane Helix	735	755	0.86
Cytoplasmic	756	758	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFAFFGIFW LQIFGSILFL LGFFPHKNDS TGKAMSNQFS PPAVIDQVVF VMVDALRADF  60
   61 VFSKSHNMPF TQSLLYNSTH GIGFSAFARS PTVTMPRLKA LTTGTIPGFL DVLLNIAESD 120
  121 TGSSIEAQDS WVYQLNSFNK KIEFYGDDTW LKLFPSAFSK FEGTTSFFVS DYTEVDNNVT 180
  181 RNFDHALPSS LSHSWDALIL HYLGVDHIGH LYGPSSPLLN IKLLEIDTII SRIYKYLQEY 240
  241 DEKTNTHSLI VLCGDHGMNE VGNHGGSSSG ETTAALSLLF PSNELSHINK PILNMDDNPY 300
  301 SILERVEQVD VVPTICLLLG IPIPKGNMGK VLSPVTELWK DTKTAKMAAL SNLFQLSLLK 360
  361 NPSLTTSELS TQFQDSDLND IRLALENLQS QMVAQSSSYS LDRMLVAISI LGACSILSLI 420
  421 LFRNLYNYKE LLAFAPFVVQ NIIIVFSSSF IEEEHVIWYF AAVSLSLLQL LNPKTRLAGS 480
  481 LQLFCLSIIK RWNQTGQKYS DLRDIVDDFI APSTFMKTIL CVTSAFMPAI RSPSPINFLS 540
  541 SMFIAFYKLM PIISKHLNEL PIIASFDYTF FVRIIWSLLL ISFLSKPTFK QLRCQLSLFI 600
  601 LLLTRLENMG LYLLYDIWQR TMPEEGTLAS VMYYVAEQVA FFSLGNSNSL ATVDLSQAYT 660
  661 GLDSYNIFAV GILLFTSVFA GALWWCLHQP KRMMDRSVKT FWIMSSISLT FLCISCFIMR 720
  721 HHLFVWSVFS PKLLYNASWA SMYFLAKCLI STIMVRLR