YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|63054481
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.93
Transmembrane Helix	59	80	0.90
Non-Cytoplasmic	81	118	0.91
Transmembrane Helix	119	136	0.90
Cytoplasmic	137	155	0.85
Transmembrane Helix	156	180	0.88
Non-Cytoplasmic	181	195	0.79
Transmembrane Helix	196	213	0.51
Cytoplasmic	214	232	0.47
Transmembrane Helix	233	251	0.50
Non-Cytoplasmic	252	302	0.85
Transmembrane Helix	303	322	0.83
Cytoplasmic	323	338	0.93
Transmembrane Helix	339	360	0.92
Non-Cytoplasmic	361	371	0.91
Transmembrane Helix	372	393	0.89
Cytoplasmic	394	441	0.94
Transmembrane Helix	442	465	0.89
Non-Cytoplasmic	466	473	0.79
Transmembrane Helix	474	493	0.92
Cytoplasmic	494	507	0.88
Transmembrane Helix	508	533	0.82
Non-Cytoplasmic	534	588	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLFRFDVL ETSTKDTERP NSKSSRLSST SGSSHPSSSS RLTVRSAVPE KSAFGSIEFI  60
   61 FYFSVILSIL TIACFKIHYV SSPKHPNYKN IEKYLKPGWL FGQKVDSADF QYSAFRENMP 120
  121 ILLLVIIVYN FLWRLVKLVF TKNTNDELAI KNNYRLCFSL LFALLVYGTG VIYVLTIALI 180
  181 NYLISKSLKN SIFNPLLTWT LDISVVFFKE YFAYCKFSSL HPGLGFLDQY TGILERWYVL 240
  241 FNITMLRLVS FNMDYYWSLK HNSEKLNTLI FDKDREPTTL TFRERVDYSC LDEDYNLKNF 300
  301 LTYIFYAPLY LAGPIISFNN FMSQMKYPTV STLKYRNLLY AIRFLVCVLT MEFLLHYAYV 360
  361 TAISKDGNWN QYSAVESAMI SFIVLFMTWL KLLIPWRLFR LWSLIDDIEP PENIVRCMCN 420
  421 NYSAVGFWRA WHRSFNRWLI RYIYVPLGGS NHSILNLFII FTFVALWHDI SWELFAWGWL 480
  481 IVLFILPERL CCFMSRRTGL TKHPYYRYIS GFGAALNIYF MIICNLIGFA VGIDGIKNVL 540
  541 VSFFLTLKGK KFIYFRICIT NYYRCNVRDS SIYNVLLCCT NHVSNSRK