YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gpi18
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.82
Transmembrane Helix	30	54	0.85
Non-Cytoplasmic	55	128	0.66
Transmembrane Helix	129	153	0.90
Cytoplasmic	154	167	0.49
Transmembrane Helix	168	202	0.65
Non-Cytoplasmic	203	215	0.46
Transmembrane Helix	216	238	0.79
Cytoplasmic	239	249	0.47
Transmembrane Helix	250	270	0.68
Non-Cytoplasmic	271	315	0.71
Transmembrane Helix	316	338	0.88
Cytoplasmic	339	347	0.71
Transmembrane Helix	348	368	0.81
Non-Cytoplasmic	369	373	0.62
Transmembrane Helix	374	391	0.72
Cytoplasmic	392	399	0.75
Transmembrane Helix	400	422	0.87
Non-Cytoplasmic	423	426	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNESAMKN AEKKSNSYLA IRMTRSGYNY FKGICVCTFL LSTILYLGIA VIMSHLCVFD  60
   61 DTAMLYLRQN RSRLAESNIF RTLFISWIRW DAIYFVDMAV NGSLFEQEWA FSSLWPKIIS 120
  121 FLAFRSKDVV LLGIVSCFAS IFFHAIACYA LYLLTKSIFS NQKMTAYTVI FYCFSPSGIY 180
  181 MSVGYTESLF AAFSFLGLLL FIKKQQYPAA FLWSLATLIR SNGIFWCIFF GMPAIGTLKI 240
  241 SLERLQLTFM QVSQLVGYGT KCLIILVPFF YNQYLGFKLF CPGVAWCNKS LPLIYPAVQE 300
  301 KYWNVGFLRY WTLNNIPNFL FALLSIIPIL FALFYSISGS TLHSFRSIKS HLVLSALYLY 360
  361 IGCFHMHTQV LNRMSSALPL LYWSMAHATL YAKSRNLKAF GHCILFVWIV YTVIQAGLYG 420
  421 SFLPPA