YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC2F7.10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLFLAASQ GELDTVKNLI SSEKIDVNAT DEGGATALHW AALNQQIPIC KFLLEHGADV  60
   61 NAIGGDLQAA PIHWAAKRGS VKTVHYLVQH GADPLLKDKQ GFNCLHLAVH AASPLLVVYL 120
  121 LHLDISVDLR DDQQHTPLMW ASYHGNEPIT NCLLRWGADV LATDEDKMTP LHWSIVGGNL 180
  181 KCMKLILKEG GIPCTAVTAN LSGQLKTPWA LASELRVSHL FKQALISNGL KVKETSEEPE 240
  241 KWVVVPSKFQ FSQKTFIIFC FLSSFIITGV FFFIMSICPM VISLIIAPLW IYFTFKYITT 300
  301 CIHANIDIVH FYLETPFLAG IFSSIFFWVW CHSLLYIVPK TLPIKPLSSL LFVLISFTCI 360
  361 GLYVRTAFQN PGYVDKIGAV VQRREEISKL LDKDLFNQSH YCLKCFQVKP PRSYHCGACK 420
  421 RCINRYDHHC PWTGNCVGAR NHRTFLLFVF TLSTLIPIYF YVAFYYLQNI PIQKKYESYR 480
  481 CLFISGTICQ WSLKDMFVLV ASLTLFVNWC WVVVLAFTQI CQVAHNVTTA EFRLFKRYGT 540
  541 LVPPTKQNSS PKNGHGIHGS FLRTVCGILG LDQCILLIRE SNCFVRCFPS RAELGSQNST 600
  601 SLSRNLSTVN PYDEGSIIKN CKTFWKQNFL NDGRQDEATR HV

Type	Start	End	Confidence
Cytoplasmic	1	255	0.60
Transmembrane Helix	256	290	0.81
Non-Cytoplasmic	291	314	0.44
Transmembrane Helix	315	338	0.81
Cytoplasmic	339	346	0.56
Transmembrane Helix	347	367	0.87
Non-Cytoplasmic	368	443	0.62
Transmembrane Helix	444	467	0.86
Cytoplasmic	468	492	0.49
Transmembrane Helix	493	507	0.61
Non-Cytoplasmic	508	508	0.10
Transmembrane Helix	509	523	0.69
Cytoplasmic	524	642	0.59