YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YA0C_SCHPO
Protein type:	Globular with Signal Peptide
Type Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRISLSNFL SLPRYKFLLF SVVLIIVMTT LVFNGHDYKQ TLNDRLTSLK NNFVEENDNA  60
   61 VLKEEPGKYT YMSLFTMPST EEDYYFNATR VLIHRLKYHP TTKSKYPIHI LALRGVDEWK 120
  121 IERFRKDGAS VIVIDPIASS DIVYDTSSFS QEISARYEQM FSKLRIFEQI QFDKICVIDS 180
  181 DILIMKNIDD IFDTPYMYQQ INTLNYTRLP SYTKPDDDTV YHFNEDFKEY GASRSEFYPY 240
  241 LLAAVSDRGE HHSIPPEDTP YFNAGLMLIR PSELHFNRIL KIGRFPYMYE NAKMMEQSLL 300
  301 NLAFSLDGWF PWTRLDPYYN GVWPSIDERP LLKTAHGKFW NIGSSEFAPV YLADWYAAYG 360
  361 EMLSFHKYET H

Type	Start	End	Confidence
Signal Peptide	1	34	0.49
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	371	0.98