YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GMH1_SCHPO
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFFTKNTL TKRKLIMLAL AIVFTFFAFG LYFIPHDEIS VFDFKLPALQ YETTVTSLDN  60
   61 FLIGGSTTLY TATVNHEDLN EPKSHEIVML LASDGNVGSF ESNLLDDCFK NRIEYAKLQN 120
  121 YNFEFVNVSS LVVPPVWGKM PAILQTMRKY PSAKWIWWLD QDALIMNKNL SLQELFLSPA 180
  181 MLQKSLLREQ PIINSFGEDN FRITPAAYSK EMIEQIQFLI SQDHNGLNAG SFLVRNSRSI 240
  241 ALLMDLLTDP SLADAGVVRH EQDLIGYFIQ KHSQVASMVG ILPQRFINAF HEGPPTMQWQ 300
  301 EGDLALHFAG CWVENKCAEL WTKYKDKII

Type	Start	End	Confidence
Signal Peptide	1	30	0.60
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	329	0.98