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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: vph1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALGELSTI HFKDLNPDVV AFQRSFVREI RRLTDTERLL RYLHSEIDLN GIHVPDHNLP  60
   61 PSYESVLESS TIEDIIERIT RLEARVRQLV ESSQLLEARY LQQLEFANVL TKADAFFSKS 120
  121 GNTVDPLRNN YETSSIFSGE DDTTAPLIEN ALELGTTGTF DSEETSPQMN TTLDFVSGII 180
  181 PTVKFQFLER ILWRTLRGNL FIHQVRADDS LIHGAEKNEE KTIFLVIAHG TQILLRIRKI 240
  241 SESLGATLFP VEEDAPGRTS QIQQANVSIS DLNAVLENTR SALYTELTFI AEHISAWEAV 300
  301 LHKDKTVFQV MNLFNYDQNH KCLIAEGWCP TANLPMVQKT LRNISDLTDS QAPTILNVVH 360
  361 TSEQPPTYFR VNKFTEGFQS IIDSYGIATY REVNHGIVAI VTFPFLFAIM FGDLGHGAIM 420
  421 ASVALMFVLY EKTLGAKKDL DEIVGMVFYG RYIVLLMGLF SMYVGFVYND LFSKPMSIFS 480
  481 SRWVWPVKSE EAIARAVQVG TYPIGIDPTW HSADNNLLFM NSYKMKLSII LGVIHMTFCL 540
  541 FLSLSNYRFF KRKLDIYAVF VPSLIFLEAI FGYLVITIVY KWCIDWKAKD LQPPSLLNML 600
  601 ILMFLSPGTL EDQLYPGQKY LQVGLVIAAL ICVPWLLIVK PFVLWRRHSN EENKYQSLNS 660
  661 DLPNVDEADA LMAVDSQEKQ AEPFELGEVV IHQVIHTIEF CLGCVSHTAS YLRLWALSLA 720
  721 HNQLSSVLWN MTLANGFRMT GIVGSIFVVI LFGFWFIATC VVLVAMEGTS AMLHSLRLHW 780
  781 VEGMSKHFEG EGYAFTPFTF KVTAE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle