YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VATO_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFSTSLWT TTVMSIIVGL YMLFHNSGES FDFGSFLLDT SPYTWGLLGI ASCVAFGIIG  60
   61 AAWGIFICGT SILGGAVKAP RIKTKNLISI IFCEVVAIYS LIIAIVFSAK INDINPAGFY 120
  121 TKSHYYTGFA LFWGGITVGL CNLICGVCVG ITGSSAALAD AQDASLFVKV LVVEIFGSVL 180
  181 GLFGLIVGLL IGGKASDFS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	25	0.95
Non-Cytoplasmic	26	44	0.91
Transmembrane Helix	45	67	0.93
Cytoplasmic	68	86	0.77
Transmembrane Helix	87	109	0.93
Non-Cytoplasmic	110	128	0.93
Transmembrane Helix	129	153	0.89
Cytoplasmic	154	169	0.79
Transmembrane Helix	170	192	0.92
Non-Cytoplasmic	193	199	0.91