YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vma3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDLCPVYA PFFGVMGCTA AIVFASFGAA YGTAKAGVGI SAMGVLRPDL IVKNTIPVVM  60
   61 AGIIAIYGLV VSVLISGNLK QILSLYSGFI QLGAGLSVGL AGLAAGFAIG IVGDAGVRGT 120
  121 AQQPRLFVAM ILILIFAEVL GLYGLIVALL LNTRATDNVT C

Type	Start	End	Confidence
Cytoplasmic	1	7	0.50
Transmembrane Helix	8	34	0.82
Non-Cytoplasmic	35	54	0.46
Transmembrane Helix	55	77	0.88
Cytoplasmic	78	87	0.40
Transmembrane Helix	88	112	0.86
Non-Cytoplasmic	113	125	0.46
Transmembrane Helix	126	151	0.86
Cytoplasmic	152	161	0.48