YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: UBR1_SCHPO
Protein type: Transmembrane
Type Confidence: 0.48
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQDESSRSL PRSALIRRRL SLFLQSHALM YSFLWSESAK KSLLNEVFSA LLGYDHTLWN  60
   61 TLLPERPTID ASFLLRRAQG HSEGDEYRHG TCESKCGHIF RKGEVFYRCK TCSVDSNSAL 120
  121 CVKCFRATSH KDHETSFTVS AGSGGCCDCG NAAAWIGDVS CKIHSHEEDA TISNDMIDEI 180
  181 PEKLENSIQT TIDCVLDFVL DVFSCSPENL KKMPTLESIL QDEKTSRLSE NKYGDIDDSC 240
  241 NMYSLVLWND EKHSFKQFYE QITTALELPN NVFGKKMANI INDIGRACIV TETNIKELLK 300
  301 IGQKLAQINL AVSIRSMRDI FREESCAVLL EWLADIAGSS ICGKRNYFSS VICKELVRPW 360
  361 NCGLHNSDLT FRLSLRSLAL PEIVAIDSPD IFLNEDHINS SGPSDTSSHM LETDESSIHS 420
  421 RHWYPSNSLP DVLSYASRVR FDYFFLYDLK LWKSLRYKLQ ELYLGYFITQ PGFKEIMGAR 480
  481 IAISYRRLAE LFLLLDREPE HSVIFFSMQI FTVADVAKLL VTEYDFLTTI NATLYTFFTY 540
  541 KKLNTPNYVD QHAMIRTDSA AFHSRRYIHI FHHIQFMLSI PCVAEIVRED LKFLKQYADF 600
  601 FNLFQGMCPY TRAVSQHVEW ENDSWMYVLN VSLQVAKLCR HVGNVFMELN TNKLANAINY 660
  661 LISLILYPKA RNESWTNTES LTTGITVDER GNSKLIEYDI ALQPVSFHHP LHWLLVYLLS 720
  721 FYVERDNYKL LWTQLDLLAV TDHPLRVCAW LSQMRAKLWI RNGTTLRDQA HHYRNLSFHE 780
  781 YTFDLDVLLL QLTLTYGDPD AILPSFISRF QLEDQMYGRF FVPHKHYDVS QVTIMMEEFL 840
  841 LLLISIVCNT AVLDHWDITR RIEYGIAHIL CFRPLPYSEI TKRTCEHLLE HKQFESTLKK 900
  901 VATFRNAEGI NDSGSFTLKD EYFDYVDPFN IHYSRNQREE AENILRRRYS KQHSKHLESV 960
  961 VYEEYHPILH SNITIPILQS DSFVGILWHT IVYAYIYPYD QGKLEGLVNT ALHACLLVLM1020
 1021 SEKGSEPIFS KKICENRFPV VEGLQEYCNS PDVTLFSVLC QMKNHRNFVY VKEKISLIMK1080
 1081 ILKSEVPLLY EPVYAETLSI SSSKIVQSLS DAEQQEQHLA KVRMAKERQA RIMEQFRMQQ1140
 1141 NKFLENHALF EASDCEMDEA DEFSVTSSVS TKLFLDPPID TCLLCQEELK DKRPYGTLVF1200
 1201 VLRSSVLRLF PADDANYVSE VLDIPDSLDH EIQERPFGLA GKRKKVLDST EAYDYDNYYY1260
 1261 EKKGNELHQL KDSFNGFPPD QLDRGLHATG CGHFMHIDCF KNHIATVTLA TRANPYRNHP1320
 1321 HNLSMKEFLC PLCKALCNTI FPILWRPKEE INFQEAGVLT APLKNWLVSK TFSFNKDLNQ1380
 1381 QLLDIETSPS EHTQSYNLNL LDVLQHTLRD SLKDIYTLNT GADNSSDNVE ENADNLFQSS1440
 1441 VLDHVHFKSV VNNEVPADER LAISDDIFEL YRRLDDVIDL NSSLYSDDFI PVNGKLHNVV1500
 1501 KLFSYSLCQV EASTRGHIKC SSIPADIWVH NLGKNQQVFL RILSESIKTY TLLCAHDSQK1560
 1561 RIGGSIQEFE FISFCQQKRI FGRLLPSLDS PVTKSITDDR VEPLLVKDTF REFAEASVSG1620
 1621 LLSCDESFHY LTQLYYTADI VRNLWILLSQ RNSLLKCMES VEFEAFDYEQ LKGFEHLVIQ1680
 1681 IWKSLRVDGA GLINFDCCTE DDLNNPHLLF TLYKLLERFS LIFLRKCALL WYCRYGVSFE1740
 1741 TQPNLNFQNS ELSRLQTKMH IPGVIELSNH LCLTASSTEW SLIKHWCNFF TETGPLCDFP1800
 1801 RAYYPGIYEL VSLPYELDKV FELLLARRCS KCLTEPMEPA ICLFCGKLLC FQSHCCSFNG1860
 1861 IGECNLHMQQ CASDIGIFLI VKKCAILYLN PPVGSFSVAP FLDAYGETDL GLRRGRSQYL1920
 1921 SQKRYDETVR TMWLNGSIPS YIARQLDANP DTGGWETL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle