YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	trk1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.59
Transmembrane Helix	16	39	0.84
Non-Cytoplasmic	40	79	0.72
Transmembrane Helix	80	104	0.86
Cytoplasmic	105	469	0.98
Transmembrane Helix	470	492	0.91
Non-Cytoplasmic	493	507	0.90
Transmembrane Helix	508	530	0.77
Cytoplasmic	531	536	0.76
Transmembrane Helix	537	562	0.87
Non-Cytoplasmic	563	599	0.79
Transmembrane Helix	600	620	0.87
Cytoplasmic	621	635	0.74
Transmembrane Helix	636	651	0.43
Non-Cytoplasmic	652	658	0.36
Transmembrane Helix	659	680	0.66
Cytoplasmic	681	716	0.63
Transmembrane Helix	717	737	0.83
Non-Cytoplasmic	738	744	0.55
Transmembrane Helix	745	768	0.68
Cytoplasmic	769	841	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNYIQRWF KWVIPTFGFL AIHYIYIISL TIIASILLFT GGTTTKIKYI DALFLASSAT  60
   61 TQTGLNSVDL NSLSIWQQFI LYGFTAITVP IWMHGSISFI RLYWFRRKFK DVVRQNRTRK 120
  121 FQRKLRKSLM KKSEDDEEQG VRGRKIRVML PYLHSLRSPT SLKNFSRFDT HDSTNNPYFP 180
  181 DNPPSPKADI SKDEYFGKYL PKKSDTLDMD LESHNMTFHD YEPSIENKNY DFGSSHSASM 240
  241 QMYEMDDLHP RLRRQSSFIS SVNPLEADDT RETLSEGALV QESLPMAYSY SDTNLVVSRD 300
  301 SFTLTGDDNL FPEGGLRPAN TIDGIVRSSL SSSSLSKDTE PSTVDMHIAF TGLNKPTIER 360
  361 ERNLKLRKKS RFYKKSLRSR FSRGLHRPIR WTKSFTSNRR NLTLERVLSS AFAKKREPSI 420
  421 SSRHTTMSLP YLSYNPTVDR NSAFVALSKE QRDELGGIEY RALKCVCSMV TLYFIIFNIA 480
  481 AFVTFIVFAY TAVGSREVID SYDLRRGWWA LFSSASSFND LGFSLIPSSF VPMNRNIFLL 540
  541 LISSLFIIAG NTGFPCFFRT FIWTTYKLYP FSFEKKEAMA FLLDHPRRCF TLLFPSGATW 600
  601 VLFFVLLLLN VIDLVLFMVL DTGSKAVASL PKGIRVVNAI FQSVCTRTAG FTSVSISELH 660
  661 PAVLVSYMVM MYISVYPVAI NMRNTNVYEE RSLGVYRTED DEGKSFLKDH LTEQLSYDLW 720
  721 YIFLGLFIIC ICEGGKISNP LDTDFSIFTV LFEVVSAYGT VGLSTGLSSS NCSLSARFTT 780
  781 ISKLVIIALE LRGRHRGLPR AVDRAILLPS EKNNLKEEED YQRRHGFSID NARGSIAVSR 840
  841 D