YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nda3
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREIVHIQAG QCGNQVGAAF WSTIADEHGL DSAGIYHGTS EAQHERLNVY FNEAAGGKYV  60
   61 PRAVLVDLEP GTMDAVKSGK FGNLFRPDNI IYGQSGAGNI WAKGHYTEGA ELADAVLDVV 120
  121 RREAEACDAL QGFQLTHSLG GGTGSGMGTL LLSKIREEYP DRMMATFSVA PAPKSSDTVV 180
  181 EPYNATLSMH QLVENSDETF CIDNEALSSI FANTLKIKSP SYDDLNHLVS AVMAGVTTSF 240
  241 RFPGELNSDL RKLAVNMVPF PRLHFFMVGF APLAAIGSSS FQAVSVPELT QQMFDANNMM 300
  301 VAADPRHGRY LTVAALFRGK VSMKEVDEQI RSVQTKNSAY FVEWIPDNVL KAVCSVPPKD 360
  361 LKMSATFIGN STSIQEIFRR LGDQFSAMFR RKAFLHWYTG EGMDEMEFTE AESNMNDLVS 420
  421 EYQQYQEAGI DEGDEDYEIE EEKEPLEY

Type	Start	End	Confidence
Cytoplasmic	1	262	0.53
Transmembrane Helix	263	284	0.63
Non-Cytoplasmic	285	448	0.93