YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sut1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.98
Transmembrane Helix	33	52	0.94
Non-Cytoplasmic	53	71	0.90
Transmembrane Helix	72	92	0.94
Cytoplasmic	93	105	0.86
Transmembrane Helix	106	125	0.92
Non-Cytoplasmic	126	140	0.80
Transmembrane Helix	141	162	0.90
Cytoplasmic	163	182	0.89
Transmembrane Helix	183	204	0.91
Non-Cytoplasmic	205	213	0.82
Transmembrane Helix	214	237	0.89
Cytoplasmic	238	277	0.93
Transmembrane Helix	278	301	0.81
Non-Cytoplasmic	302	320	0.86
Transmembrane Helix	321	342	0.85
Cytoplasmic	343	423	0.97
Transmembrane Helix	424	445	0.92
Non-Cytoplasmic	446	452	0.74
Transmembrane Helix	453	473	0.93
Cytoplasmic	474	489	0.94
Transmembrane Helix	490	513	0.89
Non-Cytoplasmic	514	527	0.83
Transmembrane Helix	528	547	0.85
Cytoplasmic	548	553	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDENQLEN GQLLSSENEA SSPFKESIPS RSSLYLIALT VSLLGVQLTW SVELGYGTPY  60
   61 LFSLGLRKEW TSIIWIAGPL TGILIQPIAG ILSDRVNSRI GRRRPFMLCA SLLGTFSLFL 120
  121 MGWAPDICLF IFSNEVLMKR VTIVLATISI YLLDVAVNVV MASTRSLIVD SVRSDQQHEA 180
  181 NSWAGRMIGV GNVLGYLLGY LPLYRIFSFL NFTQLQVFCV LASISLVLTV TITTIFVSER 240
  241 RFPPVEHEKS VAGEIFEFFT TMRQSITALP FTLKRICFVQ FFAYFGWFPF LFYITTYVGI 300
  301 LYLRHAPKGH EEDWDMATRQ GSFALLLFAI ISLAANTALP LLLEDTEDDE EDESSDASNN 360
  361 EYNIQERNDL GNIRTGTNTP RLGNLSETTS FRSENEPSRR RLLPSSRSIM TTISSKVQIK 420
  421 GLTLPILWLS SHVLFGVCML STIFLQTSWQ AQAMVAICGL SWACTLWIPY SLFSSEIGKL 480
  481 GLRESSGKMI GVHNVFISAP QVLSTIIATI VFIQSEGSHR DIADNSIAWV LRIGGISAFL 540
  541 AAYQCRHLLP INF