YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SURF4_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRSPFSTI PLSMNQDSYQ TRTTVGIRKK TFSERACQFM EQAETFMAPF TPYMPLLGRF  60
   61 LIVATYFEDA IRIVTQWPEQ VSYMRDYRRF RFGTAPLLLF VCVVLMLVGS TLVVFKKRQA 120
  121 YAIGSLLFVT LLQAFAYGLI TSGEMFFRNM SVIGGLCLVA SDTFIHRRIN RFAGLPAVSE 180
  181 HNKRTYFQLA GRVLLIFMFL GLLAKEGSGI SWTRILVHIL SVTACAMVVI GFKAKFFAAV 240
  241 LVLILSVANF IINSFWSVPR ESPYRDFYRY DFFQTLSIVG GLLYLVNTGP GKFSVDEKKK 300
  301 IY

Type	Start	End	Confidence
Cytoplasmic	1	49	0.79
Transmembrane Helix	50	67	0.53
Non-Cytoplasmic	68	91	0.65
Transmembrane Helix	92	114	0.91
Cytoplasmic	115	119	0.67
Transmembrane Helix	120	140	0.90
Non-Cytoplasmic	141	145	0.63
Transmembrane Helix	146	165	0.85
Cytoplasmic	166	184	0.76
Transmembrane Helix	185	204	0.91
Non-Cytoplasmic	205	209	0.68
Transmembrane Helix	210	232	0.83
Cytoplasmic	233	236	0.65
Transmembrane Helix	237	258	0.90
Non-Cytoplasmic	259	271	0.69
Transmembrane Helix	272	291	0.73
Cytoplasmic	292	302	0.67