YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	shy1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.39
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFWWKSATKF TFSKRGPCVF RYLSTLEGTT VRPKKNKFLV GLLSAVPIVT FALGTWQVKR  60
   61 REWKMGIINT LTERLQQPAI LLPKTVTEQD TKKLEWTRVL LRGVFCHDQE MLVGPRTKEG 120
  121 QPGYHVVTPF ILDDGRRILV NRGWIARSFA EQSSRDPSSL PKGPVVIEGL LRQHTDKPRF 180
  181 MMKNEPEKNS FYFLNVREFA QLKGTLPILI TELQPSLTPL QEADHVKRGL PLGHPLKVEI 240
  241 FNSHTEYIIT WYSLSVVSAI MLYVYFKRGS GTSSLNSAYE RSKILNNKRL

Type	Start	End	Confidence
Signal Peptide	1	54	0.60
N-region	1	45
H-region	46	51
C-region	52	54
Cleavage Site	54	55
Non-Cytoplasmic	55	247	0.88
Transmembrane Helix	248	266	0.66
Cytoplasmic	267	290	0.59