YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC3H7.02
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	132	0.87
Transmembrane Helix	133	153	0.90
Non-Cytoplasmic	154	160	0.57
Transmembrane Helix	161	181	0.80
Cytoplasmic	182	187	0.46
Transmembrane Helix	188	203	0.47
Non-Cytoplasmic	204	213	0.63
Transmembrane Helix	214	235	0.84
Cytoplasmic	236	242	0.52
Transmembrane Helix	243	263	0.80
Non-Cytoplasmic	264	296	0.75
Transmembrane Helix	297	316	0.82
Cytoplasmic	317	329	0.80
Transmembrane Helix	330	352	0.80
Non-Cytoplasmic	353	423	0.70
Transmembrane Helix	424	444	0.77
Cytoplasmic	445	456	0.82
Transmembrane Helix	457	481	0.81
Non-Cytoplasmic	482	482	0.46
Transmembrane Helix	483	504	0.76
Cytoplasmic	505	517	0.59
Transmembrane Helix	518	550	0.78
Non-Cytoplasmic	551	877	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIKKIKHY FADPADLPQD EAPDSVPGLV PPPSNFVPVY PEPTYSDTVS KKGTIVRVVR  60
   61 HTASKLTKHG DSSQSLSTLP NNDISVGEYV EPLPSVPGWL KQNIFSHFGT RLLHYLRSLF 120
  121 PIMNWLPRYN WNWLVYDFIA GITVGCVVVP QGMSYAKVAT LPAQYGLYSS FVGVAIYCIF 180
  181 ATSKDVSIGP VAVMSLVTSK VIANVQAKDP NYDAAQIGTT LALLAGAITC GLGLLRLGFI 240
  241 IEFIPVPAVA GFTTGSALNI MAGQVSSLMG YKSRVHTNAA TYRVIIQTLQ NLPHTKVDAA 300
  301 FGLVSLFILY LVRYTCQHLI KRYTKFQRVF FLTNVLRSAV IIIVGTAISY GVCKHRRENP 360
  361 PISILGTVPS GFRDMGVPVI SRKLCADLAS ELPVSVIVLL LEHISIAKSF GRVNDYKVIP 420
  421 DQELIAMGAT NLIGVFFHAY PATGSFSRSA INAKSGVRTP LGGIFTAGVV VLALYCLTGA 480
  481 FYYIPNAVLS AVIIHSVFDL IIPWRQTLLF WRMQPLEALI FICAVFVSVF SSIENGIYTA 540
  541 VCLSAALLLF RIAKPSGSFL GILKIANKFD DDENSIDVVR DIYVPLNQKG MNPNLTVRDP 600
  601 PAGVLIFRLQ ESFTYPNAGH VNSMLTSKAK TVTRRGNANI YKKASDRPWN DPAPRKKKNA 660
  661 PEVEDTRPLL RAIILDFSAV NHIDTTGVQA LVDTRKELEI YAGDEVEFHF TDINNDWIKR 720
  721 TLVAAGFGKA RDATKYTSRS IEVGSAAPLR DIETPMAPGN SRIVMPSSVR VRPFDEEEAI 780
  781 ESSIPAIVSE DGADSDTISV SDDKDKKVEG HRPSQDPTFS HHEYYPVIST TYPFFHVDVT 840
  841 SAVVDIQYRH VLDVNYKPKI VTNEVENENI EHSDGAA