YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC3H1.05
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPGLCFLKE ISVIQATPKP TTRSFANCCK MGILQHLMHI LDIPGFPWKI VIAGFSIGKY  60
   61 AWDLYLRRRQ VPYLLREKPP AILAEHVDEK KYQKALSYAR DKSWFSTIVS TFTLAVDLLI 120
  121 IKYDGLSYLW NITKFPWMDK LAASSSRFSL STSITHSCVF MFGLTLFSRL IQIPFNLYST 180
  181 FVIEEKYGFN KSTLKIFVID LLKELSLGGL LMSVVVGVFV KILTKFGDNF IMYAWGAYIV 240
  241 FGLILQTIAP SLIMPLFYKF TPLENGSLRT QIEELAASIN FPLKKLYVID ASRRSTHSNA 300
  301 FFYGLPWNKG IVLFDTLVKN HTEPELIAIL GHELGHWYMS HNLINTIIDY GMSLFHLFLF 360
  361 AAFIRNNSLY TSFNFITEKP VIVGLLLFSD ALGPLSSILT FASNKVSRLC EYQADAFAKQ 420
  421 LGYAKDLGDG LIRIHDDNLS PLEFDSLYTS YYHSHPILVD RLNAIDYTTL KKNN

Type	Start	End	Confidence
Cytoplasmic	1	103	0.69
Transmembrane Helix	104	121	0.76
Non-Cytoplasmic	122	147	0.66
Transmembrane Helix	148	171	0.79
Cytoplasmic	172	204	0.67
Transmembrane Helix	205	224	0.90
Non-Cytoplasmic	225	233	0.61
Transmembrane Helix	234	258	0.83
Cytoplasmic	259	342	0.73
Transmembrane Helix	343	364	0.84
Non-Cytoplasmic	365	380	0.66
Transmembrane Helix	381	402	0.70
Cytoplasmic	403	474	0.69