YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	spo14
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELHLSFPA YSLCWINNHQ MAVGGGGGTT KSGVKNKLKL LSYEDYEPEV GEGHTKFIEH  60
   61 GEIELKHSDD AVMSLGYFKN ELIAGINNTI DGKLIDHLRL YGRKDKLFEE KNALRLTDFD 120
  121 NDEQYQRLCL FEPLHDAICI SCTNKSFFII SKNDHKVLFE KHGSDVYDVS STEDKLAIAV 180
  181 DDRVEIYDWN TFELVQVLYM PVERATVRGV SFLPNQSIVA AYNYIKDSKR FASLVRFDYS 240
  241 SKNQLWRFGM IRDLKNAKGV TCFCCDKENG MIIVAGADCS IRFMSLDLTK LSQVYKHSLP 300
  301 VTDMQLSPDS EALVSVSADG LLCLQFVGKF KNLSAVKLED AGVILRLSLM FPFVLAILYF 360
  361 YLQLLFPDEK LDAIHRFFSF ILHIFSKYTI RNYDL

Type	Start	End	Confidence
Cytoplasmic	1	341	0.49
Transmembrane Helix	342	362	0.80
Non-Cytoplasmic	363	395	0.50