YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	spc3
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVDTFTNRG STFFSKLSTV LFFLCAVITF QGVIQRREVE LDTPVYVHYA KYRSARFYHA  60
   61 FRNVRQQYAQ VKFNMDADLS ELWDWNTKHV VVYLVASYST EKHEKNQVVV WDKILSSPEE 120
  121 SKMFMKDTLS NIQAHPFNEY SNQFEGKNAT YTLHWTVSPK MGFLSWGAGP GSYEIPFHKI 180
  181 ITQPK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.60
Transmembrane Helix	12	34	0.65
Non-Cytoplasmic	35	185	0.88