YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	psh3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRSIFRFA DEKGLKVAAR YGVLMSTSFI FALLFHSSVA DVNTLWSPGP ESAFDAAETY  60
   61 YTLVAGSHFI VKYTVYTIMG LNMIFHLIQA TGAKGDDKLF FYSSTLLYLT ALILFIVNVA 120
  121 PSMLVVKLQN YVQFPRNMHL SVLAASHVLV EFLLAGVILI QLGYVFGYHV QSIQQREYAE 180
  181 DMREQELAEK AKLESESATT QSVETVSTES VSKRK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	40	0.94
Non-Cytoplasmic	41	68	0.93
Transmembrane Helix	69	88	0.87
Cytoplasmic	89	98	0.81
Transmembrane Helix	99	124	0.81
Non-Cytoplasmic	125	142	0.88
Transmembrane Helix	143	166	0.88
Cytoplasmic	167	215	0.93