YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sco1
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRRGLVFSR HCHYSLIRPR FPLNRTCLAR FADGRKNLAT DNRTQTYQSW RGMISIRALL  60
   61 LAAATSVGLY AYFQHEKKKV LERQNDKVLA TIGRPQLGGA FSLIDHHGNR VTDNDFKGKF 120
  121 SLIYFGFTRC PDICPDELDK MSAAIDIVNN VVGDVVYPIF ITCDPARDPP QEMAEYLEDF 180
  181 NPKIVGLTGS YEEIKDICKK FRVYFSTPKN IDPKKDDYLV DHSVFFYLMD PEGKFIEVFG 240
  241 RNSTSEDLAR AIGSYYLSRK KQK

Type	Start	End	Confidence
Cytoplasmic	1	52	0.69
Transmembrane Helix	53	73	0.80
Non-Cytoplasmic	74	263	0.85