YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sec61
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	55	0.95
Non-Cytoplasmic	56	75	0.93
Transmembrane Helix	76	97	0.87
Cytoplasmic	98	115	0.87
Transmembrane Helix	116	137	0.91
Non-Cytoplasmic	138	144	0.84
Transmembrane Helix	145	167	0.94
Cytoplasmic	168	174	0.88
Transmembrane Helix	175	195	0.87
Non-Cytoplasmic	196	247	0.56
Transmembrane Helix	248	270	0.84
Cytoplasmic	271	292	0.49
Transmembrane Helix	293	317	0.58
Non-Cytoplasmic	318	358	0.50
Transmembrane Helix	359	380	0.88
Cytoplasmic	381	414	0.95
Transmembrane Helix	415	434	0.85
Non-Cytoplasmic	435	437	0.55
Transmembrane Helix	438	458	0.61
Cytoplasmic	459	479	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLRFLDLV KPFAPFLPEI AAPERKVPFK QKMLWTGVTL LIFLVMSQVP LYGIVSSDSS  60
   61 DPLLWLRMIL AANRGTLMEL GISPIVTSSM LVQLLVGSQL IEVNMELKSD REMYQLVQKF 120
  121 LAIIIAFGQA TAYVLTGMYG RPQDLGAGIC LLLILQLAAA SLIVLLLDEL LQKGYGLGSG 180
  181 ISLFIATINC ENIFWKAFSP TTYHIANGVQ FEGAVINFVY VMFTWDNKAA ALYQAFFRSG 240
  241 LTSSQIQLPN LWNFFATLLV FGVVIYLQDF RVEIPIRSQK FRGYRSTFPV KLLYTSNTPI 300
  301 MLQSALTSNL FFASRLLFNR FSSNFLVRFL GVWEQTATSG LSYYLSPPAS FQDALIDPIH 360
  361 TLVYVFFTMF ACALFSKLWI EVSGASPRDV AKQLKSQQLV MAGHREGSMY KELKRIIPTA 420
  421 AWLSGAVVGA LAVASDLLGA LGSGTAVLLC TTTIYGYYEQ LQKEIKGDQY GLPVTPMMQ