YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RCE1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVYLISFFF TAIYVVSLYT FPVARPRPSL NRNDPKVITA RCISVLLASS VCCILTRLII  60
   61 GPSLNVFTFP TDQVLKSLLH AATIFIGPLY EVWIVDKEYR LFFIHLKDCL SNAIAWRNII 120
  121 IGPLSEELTF RCCIVPICEA AGWSRLKIIF VAPLLFGMAH IHHTYEFLLA YPNAYIAAAL 180
  181 QTVVQFSYTT VFGWYTTHLF LSTHSLFPSF LVHAFCNSMG LPTLYGKIGN RNQTRIYYTL 240
  241 LLLGVLIFYM TWGITDFNNH QDFEPRLVPL N

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.86
Transmembrane Helix	5	24	0.88
Cytoplasmic	25	36	0.91
Transmembrane Helix	37	60	0.88
Non-Cytoplasmic	61	76	0.82
Transmembrane Helix	77	95	0.85
Cytoplasmic	96	145	0.87
Transmembrane Helix	146	164	0.79
Non-Cytoplasmic	165	199	0.69
Transmembrane Helix	200	221	0.76
Cytoplasmic	222	235	0.76
Transmembrane Helix	236	255	0.94
Non-Cytoplasmic	256	271	0.93