YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pdh1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHFSKFSVT KRLLILEVLF SAISFGISIY IKVFGRSSIV TFFLLCFHLV PNALFLFPWT  60
   61 IITTSFVDAN VFTLLSSILI LSVYGVEIER SWGHKEYLLF CQFLTVIPNI AVLIPCFIAY 120
  121 KITDSHYLLV AIIQSTTAIQ AGILTAWYQL YSCKKEESSN KFLCPLSKYL IYLFLSIHLF 180
  181 YVFQSFPWTY FCLAVSGTCI SELYVLFVHP VVQELFHLES HTQLPI

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.63
Transmembrane Helix	13	34	0.86
Cytoplasmic	35	38	0.65
Transmembrane Helix	39	62	0.73
Non-Cytoplasmic	63	68	0.56
Transmembrane Helix	69	86	0.91
Cytoplasmic	87	97	0.84
Transmembrane Helix	98	119	0.95
Non-Cytoplasmic	120	127	0.73
Transmembrane Helix	128	151	0.88
Cytoplasmic	152	163	0.86
Transmembrane Helix	164	182	0.85
Non-Cytoplasmic	183	187	0.65
Transmembrane Helix	188	208	0.76
Cytoplasmic	209	226	0.70