YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oxa101
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHFLIRPST RCAGSPHFNS TSSFLRKRLQ SKTILSKRLG FQFRPSSTNV LAEVSTATSG  60
   61 FNPSWWPYAL IQNTAYTINV YAGAPWWVSI ILTTLGVRLA LTPVMIASFR NSTKLSVIQP 120
  121 EMKKELEAIK TAKLDNDQLA LNQHSIALRG IYLKHNVNPF AIFILPLTQS AVFFSFFYAI 180
  181 RKMSRLSVDG FTTGGLAWFK DLSIPDPYCI LPIINAGLMF SGMQMNRANT ASTIGNSTNW 240
  241 RTFFFLCCLL SPLLTAKLPA AIFMYWIPSS LFNIVQGYIL KNPVVRSKLG FAPLPSIIEK 300
  301 QPSGFTLITN PIKSLKEFYK GVRDGFKTQY EQLQKDVSRR AVATTSASTI RPNSHYKKLK 360
  361 ELNRSKKNSK KQSN

Type	Start	End	Confidence
Cytoplasmic	1	46	0.84
Transmembrane Helix	47	66	0.65
Non-Cytoplasmic	67	82	0.72
Transmembrane Helix	83	102	0.86
Cytoplasmic	103	158	0.84
Transmembrane Helix	159	180	0.91
Non-Cytoplasmic	181	203	0.84
Transmembrane Helix	204	223	0.84
Cytoplasmic	224	241	0.80
Transmembrane Helix	242	267	0.85
Non-Cytoplasmic	268	374	0.71