YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC27F1.07
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLKLLLWS IISGLSLAEQ VWRNSNAIRT IDLRSTYTKT LTSLIIVNEG DEPQNTYRYF  60
   61 QQTSPGESVL SLSVSIKEEE KKGTNPIKVN NNVYDIPLQP PVKPGESRTL LIQAGLDGGV 120
  121 RPLPAAVDQD EEQYLVYLTT LYLDSPYTTD LQRTRLILPS AKIDTYTTYN IDGAELPNRV 180
  181 GNTLVYESRE TITGEDNDLG EIYVRYEHTV PIPRGADLYV QIDMHEYRKM LEVSERVVFE 240
  241 NHAAKLKSNF DRAKWYMGNF YNPVSTAINR VVYSLPRNSK DVYYTDEVGN ITTSHMRVEP 300
  301 HQTWIELNPR YPVFGGWNYL FQLDWKMPYE EFRSSKNRRE YLDIPLAWSP GDMIYEKAVW 360
  361 SYVFPEGATN IEIEMPVEIS NSNVTKIHKF LDTLGRQVFT YEALNVTDGV PSDIVHISYE 420
  421 YNSSAFFLRI AIITTLLILL AAAAYMIWAP

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	425	0.99
Transmembrane Helix	426	449	0.90
Cytoplasmic	450	450	0.98