YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OCH1_SCHPO
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLRLRSIV IGAAIAGSIL LLFNHGSIEG MEDLTEISML EDYTPEAANK DYVGQQEEEE  60
   61 LLYDQPSYIE EEEDPDLEAY LSDLEREELE HSLEELDEEN NYKLHLRYSF SQLQDFDEEN 120
  121 EAVHMIVPKD TYEFEVPYHA DIPKLIWQTS KDPFDREVMK YTRFWRINHP SYSHAVLDDE 180
  181 QSKALVISSF GDSSVSKISQ AYAMMPLPVL KADFFRYLVL LAKGGIYSDI DTAPLKHINN 240
  241 WIPREYRKRN IRLIVGIEAD PDRPDWNDYY ARRVQFCQWT IAAAPGHPIL WELVRRITDE 300
  301 TWKLHDSKKL SKNGESVMEW TGPGIWTDAI MDYLNWQYGP FSVENITNLE EPYLVGDVLI 360
  361 LPITAFSPGV GHMGSKSPND PMAYVQHFFA GSWKDD

Type	Start	End	Confidence
Signal Peptide	1	26	0.80
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	396	0.99